PPDB

 The Plant Proteome Database

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AT3G49140.1   Pentatricopeptide repeat (PPR) superfamily protein
Lab Annot. HugZ-2 & PPR
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein
Curated Location plastid
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G24060.2 11Arabidopsis thaliana05056577184 (25)C
AT5G24060.1 11Arabidopsis thaliana05056375184 (25)C
AT5G24060.3 11Arabidopsis thaliana045967790 (0)_
Os11g34130.1 7Oryza sativa2E-8441338600 (0)C
Os01g67370.1 7Oryza sativa7E-5842730530 (0)M
Os01g67370.2 7Oryza sativa6E-4142727480 (0)M
v1_GRMZM2G423831_P01 4a53Zea mays7E-9342140641 (1)C
Zm00001eb197710_P001 agpv5Zea mays7E-9342140640 (0)C
GRMZM2G423831_P01 3.21Zea mays7E-93421406437 (4)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DMAP_binding(1) TFIIA(2) Trimer_CC(1)
TargetP: Chloroplast (Class 5 C0.248; M0.230; S0.152; _0.172)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 499 aa (-cTP 490)
Molecular Weight 55.87 kDA(-cTP 54.85)
PI 4.29(-cTP 4.28)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
2113Detail       leaf [A. thaliana] Stroma stromawt
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2316Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18463617(suspension cells-phosphorylated proteins)
19376835(leaf phosphoproteins)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help