PPDB

PPDB	The Plant Proteome Database

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AT3G48950.1 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G23900.1 11 Arabidopsis thaliana 0 468 75 85 0 (0) S
AT4G23500.1 11 Arabidopsis thaliana 0 437 68 82 20 (2) S
AT3G61490.4 11 Arabidopsis thaliana 0 440 65 80 0 (0) C
Os03g03350.1 7 Oryza sativa 0 428 63 76 0 (0) S
Os07g14160.1 7 Oryza sativa 1E-150 433 50 67 0 (0) S
Os03g61800.1 7 Oryza sativa 2E-146 443 48 66 0 (0) S
GRMZM2G107073_P01 3.21 Zea mays 0 436 59 76 0 (0) M
Zm00001eb268650_P004 agpv5 Zea mays 0 436 59 76 0 (0) M
v1_GRMZM2G107073_P01 4a53 Zea mays 0 436 59 76 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) Glyco_hydro_28(1) Pectate_lyase_3(2) PliI(2)
TargetP:	Secreted (Class 3 C0.076; M0.182; S0.595; _0.015)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	469 aa (-cTP 439)
Molecular Weight	51.20 kDA(-cTP )
PI	8.90(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data