PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G48710.1   DEK domain-containing chromatin associated protein

Lab Annot. DEK domain-containing chromatin associated protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G63550.2 11Arabidopsis thaliana2E-14339563770 (0)_
AT5G63550.1 11Arabidopsis thaliana8E-14239562770 (0)_
AT5G55660.1 11Arabidopsis thaliana5E-38168476725 (14)_
Os01g70020.1 7Oryza sativa2E-84452385718 (18)_
Os03g40010.1 7Oryza sativa1E-51398365528 (28)_
Zm00001eb364070_P001 agpv5Zea mays3E-8041342570 (0)_
Zm00001eb142940_P001 agpv5Zea mays5E-8040743600 (0)_
v1_GRMZM2G139617_P01 4a53Zea mays5E-80407436047 (47)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ArAE_2_N(2) DEK_C(1) Macoilin(1)
TargetP: Cytoplasm (Class 2 C0.111; M0.111; S0.066; _0.894)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 462 aa (-cTP 384)
Molecular Weight 52.07 kDA(-cTP )
PI 8.79(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2321Detail       leaf [A. thaliana]  
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help