PPDB

 The Plant Proteome Database

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AT3G48500.1   Nucleic acid-binding%2C OB-fold-like protein
Lab Annot. nucleoid protein (pTAC10)
Mapman: 28.3* DNA.plastid nucleoid interacting
Curated Location plastid nucleoid (Pubmed: 23198870 16326926 )

TAIR curated location: plastid chromosome16326926
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G48500.2 11Arabidopsis thaliana06979595111 (80)C
Os01g67570.1 7Oryza sativa3E-167437567122 (22)C
GRMZM2G091419_P01 3.21Zea mays06535568116 (102)C
Zm00001eb365570_P001 agpv5Zea mays065355680 (0)C
v1_GRMZM2G091419_P01 4a53Zea mays0653556873 (73)C

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Astro_capsid_p(1) S1(2)
TargetP: Chloroplast (Class 3 C0.791; M0.129; S0.065; _0.236)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 668 aa (-cTP 628)
Molecular Weight 78.81 kDA(-cTP 74.14)
PI 4.97(-cTP 4.85)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
303Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1176Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1215Detail       leaf [A. thaliana] co-IP ClpR2 stromawild-type
1292Detail       leaf [A. thaliana] co-IP cGEP (rep. 1) stromawild-type
1294Detail       leaf [A. thaliana] co-IP cGEP (rep. 2) stromawild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)
1634Detail       leaf [A. thaliana] Stroma stromawild-type
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1636Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1638Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1643Detail       leaf [A. thaliana] total leaf tissue Wild-type
1749Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1983Detail       leaf [A. thaliana] plastid wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2122Detail       leaf [A. thaliana] Stroma stromacGep
2209Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 10
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
16326926(nucleoids)
18463617(suspension cells-phosphorylated proteins)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
20340159(chloroplast heparin-binding proteins)
19995723(chloroplast reference proteome)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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