PPDB

PPDB	The Plant Proteome Database

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AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein

Lab Annot.

hypoxia-responsive protein / zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G48030.2 11 Arabidopsis thaliana 0 269 99 100 0 (0) _
AT1G23980.1 11 Arabidopsis thaliana 7E-50 250 43 58 0 (0) C
AT5G40250.1 11 Arabidopsis thaliana 2E-43 251 39 54 0 (0) _
Os02g50930.1 7 Oryza sativa 2E-47 209 44 57 0 (0) M
Os06g12680.1 7 Oryza sativa 8E-42 206 42 54 0 (0) _
Os06g07100.2 7 Oryza sativa 1E-38 211 41 53 0 (0) _
Zm00001eb254330_P001 agpv5 Zea mays 1E-44 262 39 49 0 (0) M
v1_GRMZM2G053303_P01 4a53 Zea mays 1E-44 262 39 49 0 (0) M
GRMZM2G053303_P01 3.21 Zea mays 1E-44 262 39 49 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cir_Bir_Yir(1) DUF3377(1) FANCL_C(1) HIG_1_N(1) Prok-RING_1(2) Prok-RING_4(1) Ra
TargetP:	Cytoplasm (Class 3 C0.223; M0.197; S0.014; _0.773)
Predotar:
Subcel. Location:
TM-HMM prediction:	3 TMs
Aramemnon:	3 TMs
TAT position:
Length	349 aa (-cTP 295)
Molecular Weight	38.69 kDA(-cTP )
PI	8.02(-cTP )

Experimental Evidence

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* For details about the exprimental sources click here.

Published Proteomics Data

21311031(mitochondria)

Comparative Proteomics Data