PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G47850.1   tRNA (Ile)-lysidine synthase

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os05g13390.1 7Oryza sativa8E-084854750 (0)C
Zm00001eb053670_P001 agpv5Zea mays4E-1333629410 (0)C
GRMZM2G113569_P01 3.21Zea mays4E-0817829450 (0)C
Zm00001eb053670_P002 agpv5Zea mays4E-0817829450 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Putative_G5P(1) REV(1)
TargetP: Cytoplasm (Class 2 C0.137; M0.126; S0.013; _0.836)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 352 aa (-cTP 319)
Molecular Weight 39.22 kDA(-cTP )
PI 9.55(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1542Detail       leaf [A. thaliana] wild-type
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
20706207(contaminants cell cycle interactome (cell culture))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help