PPDB

PPDB	The Plant Proteome Database

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AT3G47820.1 PLANT U-BOX 39

Lab Annot.

PLANT U-BOX 39
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G62560.1 11 Arabidopsis thaliana 0 563 69 79 0 (0) M
AT5G65200.1 11 Arabidopsis thaliana 4E-172 560 50 67 0 (0) M
AT5G40140.1 11 Arabidopsis thaliana 4E-125 522 42 60 0 (0) C
Os06g13080.1 7 Oryza sativa 4E-57 312 40 58 0 (0) C
Os06g13090.1 7 Oryza sativa 6E-46 271 40 60 0 (0) _
Os08g32610.1 7 Oryza sativa 3E-39 267 41 58 0 (0) M
GRMZM2G100090_P01 3.21 Zea mays 1E-73 494 36 53 0 (0) M
v1_GRMZM2G100090_P01 4a53 Zea mays 1E-73 494 36 53 0 (0) M
Zm00001eb311800_P001 agpv5 Zea mays 1E-73 494 36 53 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Arm(5) CLASP_N(2) HEAT_2(1) HEAT_EZ(3) KAP(1) RYDR_ITPR(2) U-box(1)
TargetP:	Mitochondria (Class 5 C0.293; M0.418; S0.009; _0.235)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	531 aa (-cTP 512)
Molecular Weight	57.64 kDA(-cTP )
PI	7.24(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data