PPDB

 The Plant Proteome Database

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AT3G47450.1   P-loop containing nucleoside triphosphate hydrolases superfamily protein
Lab Annot. RIF1 - homologue of YqeH, a GTPase (misnamed NOA1)
Mapman: 29.2.7* protein.synthesis.ribosome biogenesis
Curated Location plastid stroma (Pubmed: 23198870 18469163 )

TAIR curated location: mitochondrion16272429
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G47450.2 11Arabidopsis thaliana0561999963 (27)M
AT3G57180.1 11Arabidopsis thaliana4E-22281275051 (46)C
AT4G10620.1 11Arabidopsis thaliana1E-2145223390 (0)C
Os02g01440.1 7Oryza sativa0470678219 (19)C
Os09g19980.1 7Oryza sativa1E-2250223390 (0)M
Os06g30380.1 7Oryza sativa1E-1938326443 (3)C
Zm00001eb209870_P002 agpv5Zea mays050563790 (0)C
Zm00001eb209870_P004 agpv5Zea mays050563790 (0)C
Zm00001eb209870_P001 agpv5Zea mays8E-15731973870 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA_16(1) Dynamin_N(3) MMR_HSR1(2) PduV-EutP(2) PPP1R26_N(1) Roc(2) RsgA_GTPase(
TargetP: Mitochondria (Class 4 C0.398; M0.779; S0.010; _0.025)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 561 aa (-cTP 524)
Molecular Weight 61.90 kDA(-cTP )
PI 9.23(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help