PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G47200.1   transmembrane protein%2C putative (DUF247)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G47200.2 11Arabidopsis thaliana04761001000 (0)C
AT3G47250.2 11Arabidopsis thaliana044267800 (0)_
AT3G47250.3 11Arabidopsis thaliana044267800 (0)_
Os11g34090.1 7Oryza sativa7E-5246928480 (0)_
Os12g29650.1 7Oryza sativa5E-5044930490 (0)_
Os04g42650.1 7Oryza sativa1E-4846529480 (0)_
Zm00001eb310380_P001 agpv5Zea mays1E-5744032500 (0)_
GRMZM2G030197_P01 3.21Zea mays1E-5744132500 (0)_
v1_GRMZM2G030197_P01 4a53Zea mays1E-5744132500 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF247(1)
TargetP: Chloroplast (Class 3 C0.864; M0.032; S0.066; _0.395)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 476 aa (-cTP 438)
Molecular Weight 54.12 kDA(-cTP 50.13)
PI 7.63(-cTP 7.79)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(PlasmaMembrane-LOPIT-callus)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help