PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G47000.1   Glycosyl hydrolase family protein

Lab Annot. glycosyl hydrolase family 3 protein
Mapman: 10.6.1 cell wall.degradation.cellulases and beta -1,4-glucanases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G47040.4 11Arabidopsis thaliana059883910 (0)_
AT3G47010.1 11Arabidopsis thaliana060383910 (0)_
AT3G47040.1 11Arabidopsis thaliana062380880 (0)_
Os05g37700.1 7Oryza sativa059067830 (0)_
Os03g53860.1 7Oryza sativa0604597474 (74)M
Os03g53860.4 7Oryza sativa0604597474 (74)S
GRMZM2G181259_P01 3.21Zea mays060467820 (0)_
Zm00001eb288760_P001 agpv5Zea mays060467820 (0)_
GRMZM2G115065_P01 3.21Zea mays060165820 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glyco_hydro_3(1) Glyco_hydro_3_C(1)
TargetP: Cytoplasm (Class 3 C0.196; M0.125; S0.054; _0.778)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 608 aa (-cTP 591)
Molecular Weight 66.31 kDA(-cTP )
PI 5.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help