PPDB

PPDB	The Plant Proteome Database

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AT3G46960.1 RNA helicase%2C ATP-dependent%2C SK12/DOB1 protein

Lab Annot.

RNA helicase, ATP-dependent, SK12/DOB1 protein
Mapman: 28.99 DNA.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G46960.3 11 Arabidopsis thaliana 0 1212 100 100 0 (0) _
AT3G46960.2 11 Arabidopsis thaliana 0 1210 100 100 0 (0) _
AT1G59760.1 11 Arabidopsis thaliana 2E-140 583 42 60 2 (2) _
Os02g06500.1 7 Oryza sativa 0 774 67 80 0 (0) _
Os11g07500.1 7 Oryza sativa 8E-127 585 40 59 10 (10) _
Os11g07500.2 7 Oryza sativa 1E-126 585 40 59 6 (6) _
Zm00001eb379350_P004 agpv5 Zea mays 0 1015 35 55 0 (0) _
v1_GRMZM2G040995_P02 4a53 Zea mays 0 1015 35 55 11 (11) _
GRMZM2G040995_P01 3.21 Zea mays 0 1019 35 54 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_22(1) DEAD(1) DSHCT(1) Helicase_C(1) rRNA_proc-arch(1) Ski2_N(1)
TargetP:	Cytoplasm (Class 3 C0.065; M0.268; S0.071; _0.764)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1347 aa (-cTP 1342)
Molecular Weight	151.18 kDA(-cTP )
PI	5.79(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data