PPDB

PPDB	The Plant Proteome Database

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AT3G46790.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

CRR2 - RNA processing
Mapman: 27.1 RNA.processing

Curated Location

plastid stroma (Pubmed: 23198870 14617084 18431481 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G57430.1 11 Arabidopsis thaliana 5E-166 634 40 61 0 (0) C
AT3G23330.2 11 Arabidopsis thaliana 4E-157 530 42 64 0 (0) _
AT3G23330.1 11 Arabidopsis thaliana 1E-156 619 38 58 0 (0) _
Os01g62910.1 7 Oryza sativa 0 613 54 72 0 (0) C
Os06g41040.1 7 Oryza sativa 5E-158 585 39 62 0 (0) _
Os03g27880.1 7 Oryza sativa 7E-155 615 38 59 0 (0) M
v1_GRMZM2G380195_P06 4a53 Zea mays 0 623 55 73 6 (6) C
GRMZM2G380195_P06 3.21 Zea mays 0 623 55 73 12 (12) C
Zm00001eb124470_P001 agpv5 Zea mays 0 623 55 73 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC3(3) DYW_deaminase(1) PPR(12) PPR_1(9) PPR_2(10) PPR_3(7) PPR_long(4) PYRIN
TargetP:	Chloroplast (Class 3 C0.578; M0.088; S0.015; _0.175)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	657 aa (-cTP 617)
Molecular Weight	74.34 kDA(-cTP 69.94)
PI	9.04(-cTP 8.98)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data