PPDB

PPDB	The Plant Proteome Database

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AT3G46630.1 DCL protein (DUF3223)

Lab Annot.

DCL-like
Mapman: 33.99 development.unspecified

Curated Location

plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G45230.1 11 Arabidopsis thaliana 3E-33 114 47 67 46 (39) C
AT1G45230.2 11 Arabidopsis thaliana 9E-33 116 46 67 46 (39) C
AT2G40030.1 11 Arabidopsis thaliana 7E-29 114 45 64 1 (1) _
Os08g21700.1 7 Oryza sativa 2E-61 119 75 84 1 (1) M
Os09g02440.1 7 Oryza sativa 1E-40 111 57 75 0 (0) M
Os02g52744.1 7 Oryza sativa 5E-38 120 49 70 12 (12) C
GRMZM2G099907_P01 3.21 Zea mays 2E-61 119 75 87 45 (36) C
Zm00001eb057280_P001 agpv5 Zea mays 2E-61 119 75 87 0 (0) C
v1_GRMZM2G099907_P01 4a53 Zea mays 2E-61 119 75 87 28 (28) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3223(1)
TargetP:	Mitochondria (Class 1 C0.036; M0.960; S0.017; _0.018)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	207 aa (-cTP 148)
Molecular Weight	24.19 kDA(-cTP )
PI	8.32(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2018	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2218	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2223	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)

Comparative Proteomics Data