PPDB

 The Plant Proteome Database

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AT3G46630.1   DCL protein (DUF3223)
Lab Annot. DCL-like
Mapman: 33.99 development.unspecified
Curated Location plastid (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G45230.1 11Arabidopsis thaliana3E-33114476743 (40)C
AT1G45230.2 11Arabidopsis thaliana9E-33116466743 (40)C
AT2G40030.1 11Arabidopsis thaliana7E-2911445641 (1)_
Os08g21700.1 7Oryza sativa2E-6111975841 (1)M
Os09g02440.1 7Oryza sativa1E-4011157750 (0)M
Os02g52744.1 7Oryza sativa5E-38120497012 (12)C
GRMZM2G099907_P01 3.21Zea mays2E-61119758736 (36)C
Zm00001eb057280_P001 agpv5Zea mays2E-6111975870 (0)C
v1_GRMZM2G099907_P01 4a53Zea mays2E-61119758728 (28)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3223(1)
TargetP: Mitochondria (Class 1 C0.036; M0.960; S0.017; _0.018)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 207 aa (-cTP 148)
Molecular Weight 24.19 kDA(-cTP )
PI 8.32(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
873Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1529Detail       leaf [A. thaliana] total leaf tissue - 0 uM CAP wild-type (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2218Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2223Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2287Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)

Comparative Proteomics Data

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