PPDB

PPDB	The Plant Proteome Database

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AT3G46510.1 plant U-box 13

Lab Annot.

plant U-box 13
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G28830.1 11 Arabidopsis thaliana 0 567 64 78 4 (4) S
AT3G54850.1 11 Arabidopsis thaliana 0 619 53 70 0 (0) _
AT5G42340.1 11 Arabidopsis thaliana 3E-159 619 42 63 1 (1) _
Os03g16824.1 7 Oryza sativa 0 623 57 74 0 (0) _
Os12g38210.2 6 Oryza sativa 0 534 63 77 0 (0) S
Os12g38210.1 7 Oryza sativa 0 534 63 77 0 (0) S
Zm00001eb012430_P002 agpv5 Zea mays 0 532 62 76 0 (0) _
v1_GRMZM2G448603_P01 4a53 Zea mays 0 564 61 75 0 (0) M
v1_GRMZM2G452016_P02 4a53 Zea mays 0 623 52 69 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Arm(6) Arm_2(3) DUF1241(2) HEAT_2(3) HEAT_EZ(2) KAP(2) Neurochondrin(2) U-box(1)
TargetP:	Cytoplasm (Class 3 C0.078; M0.072; S0.202; _0.756)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	660 aa (-cTP 602)
Molecular Weight	71.97 kDA(-cTP )
PI	5.01(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data