PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G46460.1   ubiquitin-conjugating enzyme 13
Lab Annot. ubiquitin-conjugating enzyme 13
Mapman: 29.5.11.3 protein.degradation.ubiquitin.E2
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G59300.1 11Arabidopsis thaliana2E-10916695971 (0)_
AT3G55380.1 11Arabidopsis thaliana4E-9816586930 (0)_
AT3G55380.2 11Arabidopsis thaliana7E-9019970770 (0)_
Os01g62244.1 7Oryza sativa1E-101164899535 (35)_
Os05g38550.2 7Oryza sativa6E-98164859439 (39)_
Os05g38550.1 7Oryza sativa1E-97154839439 (39)C
Zm00001eb368010_P002 agpv5Zea mays8E-10816485950 (0)_
GRMZM2G085600_P02 3.21Zea mays8E-108164859518 (14)_
v1_GRMZM2G085600_P02 4a53Zea mays8E-108164859516 (16)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RWD(1) UQ_con(1)
TargetP: Cytoplasm (Class 4 C0.044; M0.132; S0.266; _0.661)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 166 aa (-cTP 141)
Molecular Weight 18.82 kDA(-cTP )
PI 5.36(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help