PPDB

The Plant Proteome Database

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AT3G46210.1   Ribosomal protein S5 domain 2-like superfamily protein

Lab Annot. 3' exoribonuclease family domain 1-containing protein
Mapman: 27.1.19 RNA.processing.ribonucleases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G46210.7 11Arabidopsis thaliana02391001000 (0)_
AT3G46210.2 11Arabidopsis thaliana02391001001 (1)_
AT3G46210.3 11Arabidopsis thaliana02391001001 (1)_
Os03g63720.1 7Oryza sativa1E-10723564770 (0)_
Os09g07820.1 7Oryza sativa3E-1917130510 (0)_
Os09g07820.2 7Oryza sativa3E-1917130510 (0)_
Zm00001eb210560_P001 agpv5Zea mays1E-10623361780 (0)_
v1_GRMZM2G083620_P01 4a53Zea mays1E-10623361780 (0)_
GRMZM2G083620_P01 3.21Zea mays1E-10623361780 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RNase_PH(1) RNase_PH_C(1)
TargetP: Cytoplasm (Class 3 C0.128; M0.277; S0.040; _0.730)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 239 aa (-cTP 191)
Molecular Weight 25.81 kDA(-cTP )
PI 6.59(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help