PPDB

 The Plant Proteome Database

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AT3G44880.1   Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein
Lab Annot. Pheophorbide a oxygenase (PaO) or ACD1
Mapman: 19.50* tetrapyrrole synthesis.tetrapyrrole degradation
Curated Location thylakoid (Pubmed: 23198870 18431481 )

TAIR curated location: chloroplast inner membrane14657372
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G25650.1 11Arabidopsis thaliana9E-77490335025 (17)C
AT4G25650.2 11Arabidopsis thaliana2E-73513324825 (17)C
AT2G24820.1 11Arabidopsis thaliana7E-475272744275 (266)C
Os03g05310.1 7Oryza sativa054067796 (6)C
Os03g59110.1 7Oryza sativa1E-7850035490 (0)M
Os03g59100.1 7Oryza sativa1E-6754034480 (0)M
v1_GRMZM2G339563_P01 4a53Zea mays0490718332 (32)M
GRMZM2G339563_P01 3.21Zea mays0490718335 (35)M
Zm00001eb003760_P001 agpv5Zea mays049071830 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PaO(1) Rieske(1) VanA_C(1)
TargetP: Chloroplast (Class 1 C0.969; M0.041; S0.013; _0.096)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 537 aa (-cTP 488)
Molecular Weight 60.76 kDA(-cTP 55.39)
PI 7.19(-cTP 5.90)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
669Detail       leaf [A. thaliana] chloroplast plastoglobulek2 (rep. 1-1)
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1611Detail       leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1612Detail       Natural Senescence leaf [A. thaliana] chloroplast fractionation thylakoid membrane 
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1615Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  
1617Detail        [A. thaliana] m48
1618Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1626Detail       Rosettes [A. thaliana] k1xk3
1628Detail       Rosettes [A. thaliana] total leaf tissue thylakoid + envelopek1xk3
1629Detail       Rosettes [A. thaliana] Wild-type
1650Detail       leaf [A. thaliana] plastoglobules plastoglobulem48
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
1675Detail       Rosettes [A. thaliana]  
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1745Detail        [A. thaliana] Col-0
1983Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
18431481(chloroplast)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help