PPDB

PPDB	The Plant Proteome Database

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AT3G44750.1 histone deacetylase 3

Lab Annot.

histone deacetylase 3
Mapman: 27.3.55 RNA.regulation of transcription.HDA

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G44750.2 11 Arabidopsis thaliana 2E-174 245 98 98 4 (4) _
AT5G22650.1 11 Arabidopsis thaliana 1E-49 287 47 56 23 (20) _
AT5G22650.2 11 Arabidopsis thaliana 2E-48 286 47 57 22 (19) _
Os05g51830.1 7 Oryza sativa 8E-27 94 54 68 13 (13) _
Os01g68160.1 7 Oryza sativa 5E-23 318 28 42 0 (0) _
Os01g68104.1 7 Oryza sativa 3E-16 117 40 57 0 (0) _
Zm00001eb356490_P002 agpv5 Zea mays 8E-42 302 39 51 0 (0) _
GRMZM2G100146_P01 3.21 Zea mays 2E-41 304 39 51 29 (29) _
Zm00001eb356490_P004 agpv5 Zea mays 2E-41 304 39 51 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Hid1(1) Nop14(1) NPL(1) U71(1) YL1(1) zf-C2H2(1) zf-C2H2_6(1) zf-C2H2_jaz(1) zf-
TargetP:	Cytoplasm (Class 2 C0.145; M0.056; S0.107; _0.853)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	245 aa (-cTP 218)
Molecular Weight	26.37 kDA(-cTP )
PI	5.12(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1494	Detail								leaf [A. thaliana]
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1552	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1557	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1577	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	WT
1578	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	K2K3
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19200160(flower-stage 12)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19714877(interactomes 14-3-3 complexes (cell culture))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data