PPDB

PPDB	The Plant Proteome Database

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AT3G42950.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G19170.1 11 Arabidopsis thaliana 0 486 68 82 0 (0) M
AT3G48950.1 11 Arabidopsis thaliana 5E-130 404 47 65 0 (0) S
AT2G23900.1 11 Arabidopsis thaliana 1E-126 394 47 65 0 (0) S
Os09g26800.1 7 Oryza sativa 0 477 65 80 0 (0) C
Os02g54030.1 7 Oryza sativa 2E-146 277 66 87 0 (0) _
Os02g15690.1 7 Oryza sativa 9E-128 413 46 64 1 (1) S
Zm00001eb193090_P001 agpv5 Zea mays 0 468 65 81 0 (0) M
GRMZM2G047414_P01 3.21 Zea mays 0 468 65 81 0 (0) M
v1_GRMZM2G047414_P01 4a53 Zea mays 0 468 65 81 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) Glyco_hydro_28(1) Pectate_lyase_3(4) QSOX_Trx1(1)
TargetP:	Secreted (Class 3 C0.009; M0.114; S0.699; _0.009)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	484 aa (-cTP 401)
Molecular Weight	54.07 kDA(-cTP )
PI	8.64(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data