PPDB

PPDB	The Plant Proteome Database

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AT3G42630.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

Photosystem II Biogenesis Factor 2 (PBF2)
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

plastid (Pubmed: 32250043 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G14190.1 11 Arabidopsis thaliana 2E-24 335 25 45 0 (0) C
AT5G02860.1 11 Arabidopsis thaliana 2E-19 364 24 41 0 (0) C
AT5G02860.5 11 Arabidopsis thaliana 2E-19 364 24 41 0 (0) C
Os08g40870.1 7 Oryza sativa 1E-104 317 47 69 0 (0) C
Os03g19650.4 7 Oryza sativa 2E-16 351 24 41 6 (6) C
Os03g19650.3 7 Oryza sativa 3E-16 296 24 42 13 (13) C
GRMZM2G129288_P04 3.21 Zea mays 2E-110 324 48 68 0 (0) C
v1_GRMZM2G129288_P04 4a53 Zea mays 2E-110 324 48 68 0 (0) C
v1_GRMZM2G166407_P01 4a53 Zea mays 2E-110 324 48 69 3 (3) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ATP13(2) DUF2833(1) PPR(5) PPR_1(4) PPR_2(6) PPR_3(4) PPR_long(3)
TargetP:	Cytoplasm (Class 5 C0.115; M0.224; S0.090; _0.396)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	415 aa (-cTP 398)
Molecular Weight	47.72 kDA(-cTP )
PI	9.04(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)

Comparative Proteomics Data