PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G42160.1   Pectin lyase-like superfamily protein

Lab Annot.
Mapman: 10.8.99 cell wall.pectin*esterases.misc
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G11370.1 11Arabidopsis thaliana7E-113281930 (0)S
AT1G11580.1 11Arabidopsis thaliana3E-0932788762 (29)S
AT1G11580.2 11Arabidopsis thaliana3E-093278870 (0)_
Os02g18650.1 7Oryza sativa9E-093369780 (0)S
Os01g57854.1 7Oryza sativa7E-074452750 (0)M
Os02g54190.1 7Oryza sativa2E-063268750 (0)M
Zm00001eb236930_P001 agpv5Zea mays5E-083369750 (0)S
GRMZM2G008593_P01 3.21Zea mays5E-083369751 (1)S
v1_GRMZM2G008593_P01 4a53Zea mays5E-083369750 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Pectinesterase(1)
TargetP: Cytoplasm (Class 2 C0.092; M0.068; S0.137; _0.925)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 153 aa (-cTP 135)
Molecular Weight 17.80 kDA(-cTP )
PI 8.50(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help