PPDB

 The Plant Proteome Database

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AT3G29240.1   PPR containing protein (DUF179)
Lab Annot. DUF179-3
Mapman: 35.2 not assigned.unknown
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G29240.2 11Arabidopsis thaliana0317100100345 (68)C
AT1G33780.1 11Arabidopsis thaliana4E-532424458167 (37)C
AT3G19780.4 11Arabidopsis thaliana7E-1015731470 (0)_
Os10g18370.1 7Oryza sativa6E-8424055700 (0)C
Os05g34720.1 7Oryza sativa3E-4625138510 (0)M
Os01g66280.1 7Oryza sativa4E-4123935520 (0)C
GRMZM2G108480_P01 3.21Zea mays7E-72233526711 (0)C
Zm00001eb297620_P001 agpv5Zea mays7E-7223352670 (0)C
v1_GRMZM2G108480_P01 4a53Zea mays7E-7223352672 (2)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF179(1)
TargetP: Chloroplast (Class 5 C0.404; M0.101; S0.059; _0.351)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 317 aa (-cTP 269)
Molecular Weight 34.55 kDA(-cTP 29.27)
PI 5.71(-cTP 4.97)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
339Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2115Detail       leaf [A. thaliana] Stroma stromacGep
2261Detail       leaf [A. thaliana] stroma Clp clp trap
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2265Detail       leaf [A. thaliana] stroma Clp stromaClp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2285Detail        [A. thaliana] Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2298Detail        [A. thaliana] Clp C1 WT
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2304Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data

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