PPDB

The Plant Proteome Database

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AT3G29200.1   chorismate mutase 1

Lab Annot. chorismate mutase 1 (CM1)
Mapman: 13.1.6.2.1 amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine.chorismate mutase
Curated Location plastid stroma (Pubmed: 23198870 )

TAIR curated location: cytosol & plastid8224252,9291097
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G69370.1 11Arabidopsis thaliana2E-13026568801 (0)C
AT5G10870.1 11Arabidopsis thaliana1E-9126950700 (0)_
Os01g55870.1 7Oryza sativa3E-120264698021 (21)C
Os12g38900.1 7Oryza sativa2E-10326556730 (0)_
Os02g08410.1 7Oryza sativa6E-7825646651 (1)_
Zm00001eb152250_P001 agpv5Zea mays1E-13228465760 (0)C
GRMZM2G028369_P01 3.21Zea mays1E-132284657667 (58)C
v1_GRMZM2G028369_P01 4a53Zea mays1E-132284657650 (50)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Nucleoporin_C(2)
TargetP: Chloroplast (Class 1 C0.958; M0.055; S0.006; _0.034)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 340 aa (-cTP 282) (-lTP 274)
Molecular Weight 38.24 kDA(-cTP 31.97)(-lTP 31.24)
PI 5.65(-cTP 5.17)(-lTP 5.107)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2304Detail        [A. thaliana] Clp C1 WT
2316Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data


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