PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G28730.1 high mobility group

Lab Annot.

high mobility group
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G51880.2 11 Arabidopsis thaliana 8E-12 94 43 56 23 (20) _
AT3G51880.4 11 Arabidopsis thaliana 1E-11 94 43 56 19 (16) _
AT3G51880.1 11 Arabidopsis thaliana 1E-11 94 43 56 24 (21) _
Os01g08970.1 7 Oryza sativa 0 650 67 81 1 (1) _
Os05g08970.1 7 Oryza sativa 0 648 64 79 0 (0) _
Os01g08970.2 7 Oryza sativa 0 535 68 81 0 (0) S
Zm00001eb282920_P001 agpv5 Zea mays 0 633 64 79 0 (0) _
v1_GRMZM2G089107_P02 4a53 Zea mays 0 633 64 79 4 (4) _
GRMZM5G842484_P01 3.21 Zea mays 0 633 60 75 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CDC45(1) DNA_pol_phi(1) HMG_box(1) HMG_box_2(1) PH_TFIIH(1) POB3_N(2) Protamine_
TargetP:	Cytoplasm (Class 3 C0.193; M0.176; S0.060; _0.791)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	646 aa (-cTP 594)
Molecular Weight	71.65 kDA(-cTP )
PI	5.52(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data