PPDB

The Plant Proteome Database

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AT3G28730.1   high mobility group

Lab Annot. high mobility group
Mapman: 27.3.62 RNA.regulation of transcription.Nucleosome/chromatin assembly factor group
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G51880.2 11Arabidopsis thaliana8E-1294435620 (20)_
AT3G51880.4 11Arabidopsis thaliana1E-1194435616 (16)_
AT3G51880.1 11Arabidopsis thaliana1E-1194435621 (21)_
Os01g08970.1 7Oryza sativa065067811 (1)_
Os05g08970.1 7Oryza sativa064864790 (0)_
Os01g08970.2 7Oryza sativa053568810 (0)S
Zm00001eb282920_P001 agpv5Zea mays063364790 (0)_
v1_GRMZM2G089107_P02 4a53Zea mays063364794 (4)_
GRMZM5G842484_P01 3.21Zea mays063360751 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CDC45(1) DNA_pol_phi(1) HMG_box(1) HMG_box_2(1) PH_TFIIH(1) POB3_N(2) Protamine_
TargetP: Cytoplasm (Class 3 C0.193; M0.176; S0.060; _0.791)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 646 aa (-cTP 594)
Molecular Weight 71.65 kDA(-cTP )
PI 5.52(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help