PPDB

The Plant Proteome Database

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AT3G28500.1   60S acidic ribosomal protein family

Lab Annot. 60S acidic ribosomal protein P2 (RPP2C)
Mapman: 29.2.1.2.2.82 protein.synthesis.ribosomal protein.eukaryotic.60S subunit.P2
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G40040.1 11Arabidopsis thaliana5E-306580890 (0)_
AT2G27710.4 11Arabidopsis thaliana3E-1969567864 (61)S
AT3G44590.1 11Arabidopsis thaliana1E-1769527630 (18)S
Os01g09510.1 7Oryza sativa4E-1967557332 (32)S
Os01g09510.4 7Oryza sativa8E-1967557315 (15)S
Os02g32760.1 7Oryza sativa2E-1865557624 (24)_
v1_GRMZM2G114954_P01 4a53Zea mays1E-2574628364 (63)S
Zm00001eb348240_P004 agpv5Zea mays1E-257462830 (0)S
Zm00001eb348240_P001 agpv5Zea mays1E-257462830 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_60s(1)
TargetP: Cytoplasm (Class 4 C0.201; M0.110; S0.202; _0.496)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 115 aa (-cTP 106)
Molecular Weight 11.74 kDA(-cTP )
PI 4.60(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

15734919(80S cytolic ribosomes)
17317660(Plasma Membrane proteome)
17934214(cytosolic ribosome)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19546170(mature pollen grains)
20118269(developing seeds)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19260003(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help