PPDB

The Plant Proteome Database

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AT3G28140.1   RNA ligase/cyclic nucleotide phosphodiesterase family protein

Lab Annot.
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G40190.1 11Arabidopsis thaliana3E-9718480891 (0)_
AT3G28140.2 11Arabidopsis thaliana2E-8515794950 (0)_
Os09g20860.1 7Oryza sativa2E-5518451696 (6)_
v1_GRMZM2G110358_P01 4a53Zea mays3E-5119744630 (0)C
Zm00001eb098850_P005 agpv5Zea mays3E-5119744630 (0)C
Zm00001eb098850_P004 agpv5Zea mays3E-5119744630 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: 2_5_RNA_ligase2(1) LigT_PEase(1) Mhr1(2)
TargetP: Cytoplasm (Class 4 C0.108; M0.136; S0.026; _0.535)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 184 aa (-cTP 121)
Molecular Weight 20.64 kDA(-cTP )
PI 4.75(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help