PPDB

The Plant Proteome Database

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AT3G27840.1   ribosomal protein L12-B

Lab Annot. ribosomal protein L12-B
Mapman: 29.2.1.1.1.2.12 protein.synthesis.ribosomal protein.prokaryotic.chloroplast.50S subunit.L12
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G27830.1 11Arabidopsis thaliana2E-791927081672 (647)C
AT3G27830.2 11Arabidopsis thaliana2E-7919270810 (0)C
AT3G27850.1 11Arabidopsis thaliana8E-751926978667 (642)C
Os01g47330.1 7Oryza sativa1E-31145516749 (49)C
Os05g49320.1 7Oryza sativa1E-30127536918 (18)C
Os03g52400.1 7Oryza sativa2E-07148294314 (14)M
v1_GRMZM2G360021_P01 4a53Zea mays1E-311824560346 (346)C
Zm00001eb157660_P001 agpv5Zea mays1E-3118245600 (0)C
GRMZM2G360021_P01 3.21Zea mays1E-311824560413 (383)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_L12(2) Ribosomal_L12_N(2)
TargetP: Chloroplast (Class 1 C0.960; M0.050; S0.008; _0.037)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 193 aa (-cTP 134)
Molecular Weight 20.59 kDA(-cTP 14.36)
PI 6.92(-cTP 5.30)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
2319Detail       leaf [A. thaliana] PG plastoglobule 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help