PPDB

The Plant Proteome Database

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AT3G27750.1   PPR containing protein

Lab Annot. AtTHA8 - PPR protein - homologue of maize THA8
Mapman: 27.1.1 RNA.processing.splicing
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G09315.1 11Arabidopsis thaliana8E-1620030490 (0)_
AT1G62350.1 11Arabidopsis thaliana3E-1013631500 (0)_
AT1G62350.2 11Arabidopsis thaliana3E-1013631500 (0)M
Os04g39970.1 7Oryza sativa8E-2018834510 (0)M
Os07g36450.1 7Oryza sativa2E-1016831500 (0)M
Os03g18620.1 7Oryza sativa3E-0910533550 (0)M
AC217965.2_FGP012 3.21Zea mays2E-23208365045 (32)C
Zm00001eb336080_P001 agpv5Zea mays2E-2320836500 (0)C
v1_AC217965.2_FGP012 4a53Zea mays2E-23208365025 (25)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: HTH_24(1)
TargetP: Chloroplast (Class 4 C0.680; M0.339; S0.004; _0.069)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 222 aa (-cTP 190) (-lTP 97)
Molecular Weight 24.85 kDA(-cTP 21.32)(-lTP 10.87)
PI 9.47(-cTP 8.59)(-lTP 5.213)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


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