PPDB

PPDB	The Plant Proteome Database

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AT3G27400.1 Pectin lyase-like superfamily protein

Lab Annot.

Pectin lyase-like protein
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G27400.2 11 Arabidopsis thaliana 0 412 100 100 0 (0) S
AT5G63180.1 11 Arabidopsis thaliana 0 415 70 81 40 (9) M
AT1G67750.1 11 Arabidopsis thaliana 0 388 74 84 5 (0) S
Os04g05050.1 7 Oryza sativa 0 386 69 82 0 (0) S
Os04g05050.2 7 Oryza sativa 0 376 69 83 0 (0) _
Os10g31910.1 7 Oryza sativa 5E-160 393 56 69 0 (0) S
Zm00001eb088830_P001 agpv5 Zea mays 0 396 68 81 0 (0) S
v1_GRMZM2G412207_P02 4a53 Zea mays 0 362 72 83 0 (0) _
v1_GRMZM2G131912_P01 4a53 Zea mays 0 394 68 82 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(1) Pectate_lyase_4(1)
TargetP:	Secreted (Class 1 C0.021; M0.023; S0.973; _0.013)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	412 aa (-cTP 341)
Molecular Weight	45.98 kDA(-cTP )
PI	8.00(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2299	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
20706207(contaminants cell cycle interactome (cell culture))
21173025(root proteome)

Comparative Proteomics Data