PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G27290.1   RNI-like superfamily protein

Lab Annot. RNI-like protein
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G26000.1 11Arabidopsis thaliana3E-5142231461 (1)_
AT2G01620.1 11Arabidopsis thaliana4E-2625330500 (0)_
Os04g40910.1 7Oryza sativa8E-5025639540 (0)S
Os04g40910.2 7Oryza sativa1E-3825636500 (0)S
Os08g33140.1 7Oryza sativa2E-2627931450 (0)_
Zm00001eb425190_P001 agpv5Zea mays2E-4626836550 (0)_
Zm00001eb079200_P002 agpv5Zea mays6E-4624838560 (0)_
Zm00001eb079200_P001 agpv5Zea mays6E-4624838560 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: F-box-like(1) LRR_4(1) LRR_6(2)
TargetP: Cytoplasm (Class 3 C0.074; M0.288; S0.055; _0.812)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 382 aa (-cTP 373)
Molecular Weight 43.12 kDA(-cTP )
PI 4.81(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help