PPDB

PPDB	The Plant Proteome Database

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AT3G27020.1 YELLOW STRIPE like 6

Lab Annot.

YELLOW STRIPE like 6
Mapman: 34.13 transport.peptides and oligopeptides

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G41000.1 11 Arabidopsis thaliana 0 673 84 92 0 (0) _
AT5G41000.2 11 Arabidopsis thaliana 0 673 81 89 0 (0) _
AT5G41000.3 11 Arabidopsis thaliana 0 494 84 93 0 (0) _
Os04g32050.1 7 Oryza sativa 0 645 76 89 0 (0) _
Os04g44320.1 7 Oryza sativa 0 645 61 75 0 (0) _
Os02g42220.1 7 Oryza sativa 0 653 59 76 2 (2) _
Zm00001eb085320_P001 agpv5 Zea mays 0 673 75 86 0 (0) _
Zm00001eb085320_P002 agpv5 Zea mays 0 673 75 86 0 (0) _
v1_GRMZM2G085833_P03 4a53 Zea mays 0 673 75 86 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	OPT(1)
TargetP:	Cytoplasm (Class 1 C0.079; M0.058; S0.035; _0.926)
Predotar:
Subcel. Location:
TM-HMM prediction:	13 TMs
Aramemnon:	14 TMs
TAT position:
Length	676 aa (-cTP 669)
Molecular Weight	73.57 kDA(-cTP )
PI	5.88(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1346	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 2)
1348	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 1)
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1350	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 3)

* For details about the exprimental sources click here.

Published Proteomics Data

17151019(vacuole - suspension cell)
19334764(plasma membrane (cell culture))
21988472(vacuole (unfiltered data))

Comparative Proteomics Data