PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G26900.1 shikimate kinase like 1

Lab Annot.

shikimate kinase SKL1
Mapman: 13.1.6.1.5 amino acid metabolism.synthesis.aromatic aa.chorismate.shikimate kinase

Curated Location

plastid stroma (Pubmed: 23198870 19057671 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G26900.2 11 Arabidopsis thaliana 0 280 100 100 196 (162) C
AT3G26900.3 11 Arabidopsis thaliana 0 280 100 100 196 (162) C
AT2G21940.5 11 Arabidopsis thaliana 3E-35 237 34 53 0 (0) _
Os01g01302.1 7 Oryza sativa 7E-49 211 38 62 39 (39) C
Os04g54800.1 7 Oryza sativa 2E-37 255 36 52 0 (0) C
Os06g12150.1 7 Oryza sativa 4E-36 203 39 55 0 (0) M
GRMZM2G119249_P02 3.21 Zea mays 4E-52 219 40 63 141 (127) C
v1_GRMZM2G119249_P02 4a53 Zea mays 4E-52 219 40 63 124 (124) C
Zm00001eb028930_P001 agpv5 Zea mays 4E-52 219 40 63 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DAGK_cat(1) SKI(1)
TargetP:	Chloroplast (Class 1 C0.908; M0.076; S0.014; _0.017)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	280 aa (-cTP 224)
Molecular Weight	30.47 kDA(-cTP 24.48)
PI	5.05(-cTP 4.66)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
180_181	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
187_188	Detail								leaf [A. thaliana]	chloroplast stroma	clpr2-1
195_194	Detail								leaf [A. thaliana]	chloroplast stroma	ffc1-2
303	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
339	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
544	Detail								leaf [A. thaliana]	stroma (FPLC) <600 kDa (LMA)	wild-type
621	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
622	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
869	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
870	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
874	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1395	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1411	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1415	Detail								leaf [A. thaliana]	total leaf tissue 1.14 rep 1.1	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1423	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 3)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1425	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 2)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1439	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1443	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 2)
1444	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1445	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 1)
1446	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 2)
1447	Detail								leaf [A. thaliana]	total tissue (3 day HL)	wild-type (rep. 3)
1449	Detail								leaf [A. thaliana]	total tissue (3 day HL)	abck2xabck3 (rep. 2)
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
1455	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1456	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1457	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1458	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 1)
1459	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 2)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1461	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 1)
1462	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 2)
1463	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 (rep. 3)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1482	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 1)
1483	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 2)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1485	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 3)
1486	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 3)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1548	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
1569	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	k1k3
1671	Detail								[A. thaliana]
1870	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1872	Detail								Total leaf [A. thaliana]	Stroma	wild-type
1875	Detail								Total leaf [A. thaliana]	total soluble	wild-type
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1942	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1943	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1944	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1945	Detail								leaf [A. thaliana]	stroma UVR stroma	UVR
1946	Detail								leaf [A. thaliana]	stroma UVR stroma	wild-type
1948	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
1949	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2001	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2002	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS1
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2012	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2044	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2048	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2049	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2051	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2052	Detail								Total leaf [A. thaliana]	total soluble	wt and prep1-1xprep2-1xoop
2055	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2056	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2057	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2058	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2059	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2060	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2061	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2062	Detail								Total leaf [A. thaliana]	chloroplast stroma	wt and cgep
2064	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2065	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2066	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2067	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2068	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2069	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2070	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2072	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2073	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2074	Detail								Total leaf [A. thaliana]	total soluble	wt & prep1xprep2xclpt1xclpt2*
2077	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2080	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2081	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2084	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2085	Detail								Total leaf [A. thaliana]	total soluble	wt & clpt1xclpt2
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2113	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2115	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2141	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2142	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2143	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2144	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2145	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2146	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2147	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2148	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2149	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2150	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2151	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2152	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep
2296	Detail								[A. thaliana]		Clp C1 WT
2310	Detail								leaf [A. thaliana]	PG plastoglobule
2314	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane
2316	Detail								leaf [A. thaliana]	PG plastoglobule
2317	Detail								leaf [A. thaliana]	PG plastoglobule
2318	Detail								leaf [A. thaliana]	PG plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane

* For details about the exprimental sources click here.

Published Proteomics Data

18633119(stroma)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)
19995723(chloroplast reference proteome)

Comparative Proteomics Data