PPDB

The Plant Proteome Database

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AT3G26580.1   Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot. TCP34 - TPR protein DNA interaction (TAC)
Mapman: 28.3* DNA.plastid nucleoid interacting; 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location plastid stroma (Pubmed: 23198870 16438983 18431481 )
thylakoid (Pubmed: 23198870 16438983 18431481 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os03g31490.1 7Oryza sativa6E-81263556914 (14)M
Zm00001eb096140_P001 agpv5Zea mays2E-7926055700 (0)M
v1_GRMZM2G098545_P01 4a53Zea mays2E-79260557059 (59)M
GRMZM2G098545_P01 3.21Zea mays2E-79260557073 (63)M

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: ARHGEF5_35(1) CDC45(1) Nucleo_P87(1) TAP42(1) TPR_1(2) TPR_12(2) TPR_14(2) TPR_1
TargetP: Chloroplast (Class 4 C0.536; M0.216; S0.058; _0.094)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 350 aa (-cTP 272) (-lTP 269)
Molecular Weight 39.94 kDA(-cTP 31.27)(-lTP 31.01)
PI 5.94(-cTP 5.07)(-lTP 5.085)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15322131(Thylakoid-stripped)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help