PPDB

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AT3G26580.1 Tetratricopeptide repeat (TPR)-like superfamily protein

Lab Annot.

TCP34 - TPR protein DNA interaction (TAC)
Mapman: 28.3* DNA.plastid nucleoid interacting; 26.33* misc. tetratricopeptide repeat (TPR)

Curated Location

plastid stroma (Pubmed: 23198870 16438983 18431481 )
thylakoid (Pubmed: 23198870 16438983 18431481 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os03g31490.1 7 Oryza sativa 6E-81 263 55 69 14 (14) M
Zm00001eb096140_P001 agpv5 Zea mays 2E-79 260 55 70 0 (0) M
v1_GRMZM2G098545_P01 4a53 Zea mays 2E-79 260 55 70 59 (59) M
GRMZM2G098545_P01 3.21 Zea mays 2E-79 260 55 70 73 (63) M

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ARHGEF5_35(1) CDC45(1) Nucleo_P87(1) TAP42(1) TPR_1(2) TPR_12(2) TPR_14(2) TPR_1
TargetP:	Chloroplast (Class 4 C0.536; M0.216; S0.058; _0.094)
Predotar:
Subcel. Location:	Thylakoid membrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	350 aa (-cTP 272) (-lTP 269)
Molecular Weight	39.94 kDA(-cTP 31.27)(-lTP 31.01)
PI	5.94(-cTP 5.07)(-lTP 5.085)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
107	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
2144	Detail								Total leaf [A. thaliana]	total soluble stroma	wt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

15322131(Thylakoid-stripped)
19995723(chloroplast reference proteome)

Comparative Proteomics Data