PPDB

PPDB	The Plant Proteome Database

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AT3G26420.1 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein

Lab Annot.

ATRZ-1A; RNA binding / nucleotide binding
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G21660.2 11 Arabidopsis thaliana 1E-29 81 60 81 509 (362) _
AT2G21660.1 11 Arabidopsis thaliana 2E-29 81 60 81 510 (362) _
AT5G04280.1 11 Arabidopsis thaliana 2E-29 231 40 56 30 (10) _
Os03g61990.3 7 Oryza sativa 1E-55 148 62 72 23 (23) _
Os03g61990.1 7 Oryza sativa 1E-55 148 62 72 23 (23) _
Os03g61990.5 7 Oryza sativa 1E-55 148 62 72 23 (23) _
GRMZM5G874478_P03 3.21 Zea mays 3E-54 151 64 74 22 (22) _
GRMZM5G874478_P01 3.21 Zea mays 3E-54 151 64 74 22 (22) _
GRMZM5G874478_P02 3.21 Zea mays 3E-54 151 64 74 22 (22) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	RRM_1(1) RRM_7(1) zf-CCHC(1) zf-CCHC_2(2) zf-CCHC_3(1) zf-CCHC_5(1)
TargetP:	Cytoplasm (Class 2 C0.121; M0.186; S0.071; _0.803)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	245 aa (-cTP 179)
Molecular Weight	26.92 kDA(-cTP )
PI	8.93(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
1404	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1406	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1713	Detail								Rosettes [A. thaliana]	Thylakoids thylakoid membrane	k1k3
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19329564(peroxisomes (leaf))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data