PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G26340.1   N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Lab Annot. 20S proteasome beta subunit E
Mapman: 29.5.11.20.1* protein.degradation.ubiquitin.proteasome.20S
Curated Location cytosol
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G13060.1 11Arabidopsis thaliana02719296180 (98)_
AT1G13060.3 11Arabidopsis thaliana029585880 (0)_
AT1G13060.2 11Arabidopsis thaliana02958588137 (61)_
Os06g06030.1 7Oryza sativa2E-144274728143 (43)_
Os06g04800.1 7Oryza sativa5E-21188315133 (33)_
Os02g53060.1 7Oryza sativa1E-20205314939 (39)_
Zm00001eb376670_P003 agpv5Zea mays1E-14527373800 (0)_
Zm00001eb376670_P002 agpv5Zea mays1E-14527373800 (0)_
Zm00001eb376670_P001 agpv5Zea mays1E-14527373800 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Proteasome(1)
TargetP: Cytoplasm (Class 2 C0.135; M0.143; S0.134; _0.786)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 273 aa (-cTP 201)
Molecular Weight 29.49 kDA(-cTP )
PI 5.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1530Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP wild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1875Detail       Total leaf [A. thaliana] total soluble wild-type
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2161Detail       leaf [A. thaliana] stroma Clp stromaP3-strepII 31
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2219Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19114538(guard cells Arabidopsis leaf)
20516081(tagged-26S proteasome-affinity)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help