PPDB

 The Plant Proteome Database

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AT3G25690.1   Hydroxyproline-rich glycoprotein family protein
Lab Annot. CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1)
Mapman: 31.5.2* cell.plastid.movement
Curated Location envelope-outer (Pubmed: 23198870 18193273 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G25690.4 11Arabidopsis thaliana010041001000 (0)S
AT3G25690.6 11Arabidopsis thaliana010041001000 (0)S
AT3G25690.2 11Arabidopsis thaliana0100410010045 (29)S
Os12g01449.1 7Oryza sativa093163754 (4)M
Os11g01439.1 7Oryza sativa093363754 (4)M
Os11g01439.2 7Oryza sativa091163762 (2)_
Zm00001eb296680_P002 agpv5Zea mays0100959730 (0)M
Zm00001eb296680_P001 agpv5Zea mays0100959730 (0)M
GRMZM2G062738_P01 3.21Zea mays09855972113 (45)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: HALZ(3) M_domain(1) TSC22(5)
TargetP: Secreted (Class 4 C0.251; M0.140; S0.529; _0.061)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1004 aa (-cTP 995)
Molecular Weight 111.91 kDA(-cTP )
PI 5.43(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1441Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 3)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1494Detail       leaf [A. thaliana]  
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1555Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1556Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
18436743(specific to leaves)
19376835(leaf phosphoproteins)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21693672(wound-regulated leaf proteome (AOS mutant))
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help