PPDB

PPDB	The Plant Proteome Database

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AT3G25680.1 SLH domain protein

Lab Annot.

unknown protein S-layer homology domain
Mapman: 35.2 not assigned.unknown

Curated Location

envelope (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G23890.2 11 Arabidopsis thaliana 5E-63 389 35 59 0 (0) _
AT5G23890.1 11 Arabidopsis thaliana 1E-62 387 34 59 187 (186) C
AT5G52410.2 11 Arabidopsis thaliana 3E-52 382 32 54 14 (14) C
Os06g30390.1 7 Oryza sativa 3E-71 522 36 53 0 (0) C
Os03g64400.2 7 Oryza sativa 4E-57 445 32 53 16 (16) _
Os03g64400.4 7 Oryza sativa 7E-57 445 32 53 9 (9) _
Zm00001eb281400_P002 agpv5 Zea mays 1E-103 574 35 56 0 (0) M
GRMZM2G125054_P01 3.21 Zea mays 1E-103 574 35 56 10 (10) M
v1_GRMZM2G125054_P01 4a53 Zea mays 1E-103 574 35 56 4 (4) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF5850(2) NB-LRR(1) SLH(2)
TargetP:	Chloroplast (Class 4 C0.431; M0.081; S0.117; _0.044)
Predotar:
Subcel. Location:	Thylakoid membrane
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	558 aa (-cTP 513) (-lTP 490)
Molecular Weight	63.06 kDA(-cTP 57.88)(-lTP 55.52)
PI	5.18(-cTP 4.85)(-lTP 4.858)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1349	Detail								leaf [A. thaliana]	total tissue (5 day HL)	abck2xabck3 (rep. 2)
1399	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1402	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1403	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2321	Detail								leaf [A. thaliana]
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19995728(proplastid (Brassica napus))
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data