PPDB

 The Plant Proteome Database

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AT3G25480.1   Rhodanese/Cell cycle control phosphatase superfamily protein
Lab Annot. rhodanese-like domain
Mapman: 26.23 misc.rhodanese
Curated Location thylakoid (Pubmed: 23198870 )

TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G01050.1 11Arabidopsis thaliana1E-291634154824 (716)C
AT4G01050.2 11Arabidopsis thaliana2E-2916341540 (0)S
Os01g66600.2 7Oryza sativa2E-67210547110 (10)M
Os01g66600.1 7Oryza sativa3E-67210547127 (27)M
Os02g15750.1 7Oryza sativa9E-24116415953 (53)C
GRMZM2G080816_P02 3.21Zea mays9E-71235516631 (27)M
Zm00001eb365870_P001 agpv5Zea mays9E-7123551662 (2)M
v1_GRMZM2G080816_P02 4a53Zea mays9E-7123551668 (8)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Rhodanese(1) TatC(1)
TargetP: Chloroplast (Class 1 C0.942; M0.021; S0.024; _0.096)
Predotar:
Subcel. Location: Thylakoid membrane
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 264 aa (-cTP 204) (-lTP 203)
Molecular Weight 29.01 kDA(-cTP 22.55)(-lTP 22.48)
PI 8.62(-cTP 5.56)(-lTP 5.584)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1828Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Fluctuating light
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
1830Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0 Normal light
1831Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Normal light
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2133Detail       leaf [A. thaliana] chloroplast fractionation MSH1

* For details about the exprimental sources click here.

Published Proteomics Data

 15322131(Thylakoid-stripped)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help