PPDB

 The Plant Proteome Database

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AT3G25290.1   Auxin-responsive family protein
Lab Annot.
Mapman: 17.2.3 hormone metabolism.auxin.induced-regulated-responsive-activated
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G25290.2 11Arabidopsis thaliana03931001000 (0)S
AT4G12980.1 11Arabidopsis thaliana039275841 (1)S
AT5G47530.1 11Arabidopsis thaliana4E-12636950680 (0)S
Os03g09900.1 7Oryza sativa3E-12736651670 (0)S
Os08g41280.1 7Oryza sativa4E-117358496526 (26)S
Os09g32470.1 7Oryza sativa2E-11035650660 (0)S
Zm00001eb401120_P002 agpv5Zea mays2E-11637148630 (0)S
GRMZM2G050159_P01 3.21Zea mays5E-11637148630 (0)C
v1_GRMZM2G050159_P01 4a53Zea mays5E-11637148630 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cytochrom_B561(2) DUF2427(1) DUF568(1)
TargetP: Secreted (Class 1 C0.021; M0.010; S0.980; _0.019)
Predotar:
Subcel. Location:
TM-HMM prediction: 6 TMs
Aramemnon: 5 TMs
TAT position:
Length 393 aa (-cTP 364)
Molecular Weight 42.56 kDA(-cTP )
PI 9.67(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

 16618929(PlasmaMembrane-LOPIT-callus)
17317660(Plasma Membrane proteome)
19546170(mature pollen grains)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
21533090(plasmodesmata-crude)
20843791(DRM-enriched plasmamembrane)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help