PPDB

The Plant Proteome Database

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AT3G25150.1   Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

Lab Annot. nuclear transport factor 2 (NTF2) protein / RNA recognition motif (RRM)-containing protein
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G25150.2 11Arabidopsis thaliana048810010011 (9)C
AT5G60980.2 11Arabidopsis thaliana8E-784044156132 (56)_
AT5G60980.3 11Arabidopsis thaliana8E-7840441560 (0)_
Os02g29480.1 7Oryza sativa7E-81447425717 (17)_
Os04g30430.1 7Oryza sativa7E-79417425629 (29)C
Os03g30550.1 7Oryza sativa6E-7646239531 (1)_
v1_GRMZM2G091995_P02 4a53Zea mays1E-86401455810 (10)_
GRMZM2G091995_P02 3.21Zea mays1E-8640145589 (9)_
v1_GRMZM2G091995_P01 4a53Zea mays1E-85415445710 (10)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: NTF2(1) RRM_1(1)
TargetP: Cytoplasm (Class 5 C0.042; M0.285; S0.191; _0.447)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 488 aa (-cTP 478)
Molecular Weight 52.87 kDA(-cTP )
PI 6.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1579Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help