PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G24480.1   Leucine-rich repeat (LRR) family protein

Lab Annot.
Mapman: 10.5.3 cell wall.cell wall proteins.LRR
Curated Location
TAIR curated location: cell wall (sensu Magnoliophyta)16287169
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G13340.1 11Arabidopsis thaliana037988924 (4)S
AT4G18670.1 11Arabidopsis thaliana040080884 (4)S
AT1G62440.1 11Arabidopsis thaliana3E-15337063730 (0)S
Os01g41120.1 7Oryza sativa4E-14036956710 (0)S
Os05g08770.1 7Oryza sativa6E-13534061750 (0)S
Os05g08770.2 7Oryza sativa6E-13534061750 (0)S
Zm00001eb161110_P001 agpv5Zea mays1E-14736956720 (0)S
v1_GRMZM2G333811_P01 4a53Zea mays3E-14736956720 (0)S
GRMZM2G333811_P01 3.21Zea mays3E-14736956720 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LRR_1(4) LRR_4(6) LRR_6(5) LRR_8(4) LRRNT_2(1)
TargetP: Secreted (Class 1 C0.011; M0.036; S0.978; _0.018)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 494 aa (-cTP 465)
Molecular Weight 54.70 kDA(-cTP )
PI 6.46(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

16287169(Cell Wall proteome)
19200160(flower-stage 12)
18796151(cell wall (hypocotyl))
19334764(plasma membrane (cell culture))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
20813957(SUMO proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help