PPDB

The Plant Proteome Database

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AT3G24160.1   putative type 1 membrane protein

Lab Annot. putative type 1 membrane protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os08g45220.2 7Oryza sativa4E-7534642622 (2)M
Os08g45220.1 7Oryza sativa1E-7434642622 (2)S
Zm00001eb038510_P001 agpv5Zea mays9E-7435440600 (0)S
GRMZM2G115750_P02 3.21Zea mays9E-74354406025 (25)S
v1_GRMZM2G115750_P02 4a53Zea mays9E-74354406018 (17)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Secreted (Class 4 C0.019; M0.052; S0.423; _0.053)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 364 aa (-cTP 313)
Molecular Weight 39.13 kDA(-cTP )
PI 4.75(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1616Detail       Natural Senescence leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(ER-LOPIT-callus)
17151019(vacuole - suspension cell)
17432890(leaf total membranes)
19546170(mature pollen grains)
19036721(detergent resistant plasma membrane (DRM) proteins (Cell cultures))
19334764(plasma membrane (cell culture))
21173025(root proteome)
22430844(Golgi-cell-culture)
21988472(vacuole (unfiltered data))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help