PPDB

 The Plant Proteome Database

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AT3G23820.1   UDP-D-glucuronate 4-epimerase 6
Lab Annot. NAD-dependent epimerase/dehydratase protein
Mapman: 10.1.6 cell wall.precursor synthesis.GAE
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G02000.1 11Arabidopsis thaliana041968810 (0)_
AT4G00110.1 11Arabidopsis thaliana041968800 (0)_
AT2G45310.1 11Arabidopsis thaliana035875870 (0)_
Os08g41440.1 7Oryza sativa045963760 (0)_
Os09g32670.1 7Oryza sativa047162740 (0)_
Os02g54890.1 7Oryza sativa044263750 (0)_
v1_GRMZM2G429118_P01 4a53Zea mays047462750 (0)_
Zm00001eb317540_P001 agpv5Zea mays047462750 (0)_
GRMZM2G429118_P01 3.21Zea mays047462750 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 3Beta_HSD(1) adh_short(1) Epimerase(1) GDP_Man_Dehyd(1) NAD_binding_4(2) Polysac
TargetP: Cytoplasm (Class 2 C0.149; M0.050; S0.003; _0.919)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 2 TMs
TAT position:
Length 460 aa (-cTP 420)
Molecular Weight 50.57 kDA(-cTP )
PI 9.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2237Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

 19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
22430844(Golgi-cell-culture)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help