PPDB

PPDB	The Plant Proteome Database

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AT3G23820.1 UDP-D-glucuronate 4-epimerase 6

Lab Annot.

NAD-dependent epimerase/dehydratase protein
Mapman: 10.1.6 cell wall.precursor synthesis.GAE

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G02000.1 11 Arabidopsis thaliana 0 419 68 81 0 (0) _
AT4G00110.1 11 Arabidopsis thaliana 0 419 68 80 0 (0) _
AT2G45310.1 11 Arabidopsis thaliana 0 358 75 87 0 (0) _
Os08g41440.1 7 Oryza sativa 0 459 63 76 0 (0) _
Os09g32670.1 7 Oryza sativa 0 471 62 74 0 (0) _
Os02g54890.1 7 Oryza sativa 0 442 63 75 0 (0) _
v1_GRMZM2G429118_P01 4a53 Zea mays 0 474 62 75 0 (0) _
Zm00001eb317540_P001 agpv5 Zea mays 0 474 62 75 0 (0) _
GRMZM2G429118_P01 3.21 Zea mays 0 474 62 75 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	3Beta_HSD(1) adh_short(1) Epimerase(1) GDP_Man_Dehyd(1) NAD_binding_4(2) Polysac
TargetP:	Cytoplasm (Class 2 C0.149; M0.050; S0.003; _0.919)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	2 TMs
TAT position:
Length	460 aa (-cTP 420)
Molecular Weight	50.57 kDA(-cTP )
PI	9.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
351	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
1409	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.1	wild-type
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2237	Detail								seedlings [A. thaliana]	total tissue	gfs9
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2321	Detail								leaf [A. thaliana]
2324	Detail								leaf [A. thaliana]	THYLAKOIDS thylakoid membrane
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
22430844(Golgi-cell-culture)

Comparative Proteomics Data