PPDB

PPDB	The Plant Proteome Database

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AT3G23710.1 Tic22-like family protein

Lab Annot.

Tic22-III (non green plastid?)
Mapman: 29.3.3 protein.targeting.chloroplast

Curated Location

plastid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G23710.2 11 Arabidopsis thaliana 0 248 100 100 0 (0) C
AT4G33350.1 11 Arabidopsis thaliana 2E-43 271 35 53 120 (103) C
AT4G33350.2 11 Arabidopsis thaliana 9E-34 269 32 47 83 (70) C
Os07g19030.1 7 Oryza sativa 6E-62 244 50 65 0 (0) C
Os06g11020.1 7 Oryza sativa 9E-27 137 41 64 0 (0) C
Os06g11020.2 7 Oryza sativa 9E-19 98 43 66 0 (0) C
GRMZM2G130651_P01 3.21 Zea mays 3E-64 226 52 70 9 (8) C
Zm00001eb305250_P002 agpv5 Zea mays 3E-64 226 52 70 0 (0) C
v1_GRMZM2G130651_P01 4a53 Zea mays 3E-64 226 52 70 8 (8) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CdiA_C_tRNase(2) HEPN_Cthe2314(1) Rh5(1) Tic22(1) UQCC3(1)
TargetP:	Chloroplast (Class 2 C0.927; M0.046; S0.007; _0.129)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	313 aa (-cTP 217) (-lTP 199)
Molecular Weight	34.57 kDA(-cTP 23.97)(-lTP 22.25)
PI	8.43(-cTP 5.71)(-lTP 5.464)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(MITO/PLASTID-LOPIT-callus)
19525416(leaf (wt and clpr4-1 mutant))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21173025(root proteome)

Comparative Proteomics Data