PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G23300.1   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Lab Annot. dehydration-responsive protein-related
Mapman: 20.2.3 stress.abiotic.drought/salt
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G23300.2 11Arabidopsis thaliana06111001000 (0)S
AT4G14360.1 11Arabidopsis thaliana061390945 (5)S
AT4G14360.2 11Arabidopsis thaliana061390945 (5)S
Os10g33720.3 7Oryza sativa060873822 (2)S
Os10g33720.1 7Oryza sativa060873822 (2)S
Os06g47294.1 7Oryza sativa052667800 (0)M
Zm00001eb221850_P001 agpv5Zea mays061871810 (0)S
Zm00001eb221850_P003 agpv5Zea mays061871810 (0)S
Zm00001eb221850_P002 agpv5Zea mays061871810 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Methyltransf_11(2) Methyltransf_25(2) Methyltransf_29(1) Methyltransf_31(2)
TargetP: Secreted (Class 2 C0.002; M0.142; S0.942; _0.225)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 611 aa (-cTP 592)
Molecular Weight 69.36 kDA(-cTP )
PI 6.27(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1757Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 14617066(Nuclear proteome)
16618929(Golgi)
17151019(vacuole - suspension cell)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)
22430844(Golgi-cell-culture)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help