PPDB

 The Plant Proteome Database

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AT3G23070.1   CRM family member 3A
Lab Annot. CFM3a - dual targeted, plastid & mitochondria
Mapman: 27.1.1 RNA.processing.splicing
Curated Location mitochondria (Pubmed: 23198870 18799595 )
plastid stroma (Pubmed: 23198870 18799595 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G14510.1 11Arabidopsis thaliana090663756 (6)C
AT4G29750.1 11Arabidopsis thaliana063148662 (2)C
AT4G29750.2 11Arabidopsis thaliana060649670 (0)C
Os11g37990.1 7Oryza sativa074553694 (4)C
Os09g19850.1 7Oryza sativa064249700 (0)C
Os05g47850.1 7Oryza sativa2E-160628426317 (17)C
Zm00001eb114780_P001 agpv5Zea mays074153690 (0)M
GRMZM2G436001_P02 3.21Zea mays0741536937 (37)C
v1_GRMZM2G436001_P02 4a53Zea mays0741536922 (22)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CRS1_YhbY(3) DUF3010(2) DUF4278(2)
TargetP: Chloroplast (Class 4 C0.410; M0.184; S0.027; _0.029)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 881 aa (-cTP 831)
Molecular Weight 100.17 kDA(-cTP 94.50)
PI 5.94(-cTP 5.55)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
292Detail       leaf [Zea Mays] plastid stroma 
303Detail       leaf [A. thaliana] chloroplast stromawild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1214Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help