PPDB

 The Plant Proteome Database

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AT3G22640.1   cupin family protein
Lab Annot. cupin protein
Mapman: 33.1 development.storage proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G36700.1 11Arabidopsis thaliana1E-19391244231 (21)S
AT2G18540.1 11Arabidopsis thaliana7E-1838221404 (2)S
AT2G18540.2 11Arabidopsis thaliana7E-1838221400 (0)S
Os03g46100.1 7Oryza sativa6E-5542330520 (0)S
Os03g46100.2 7Oryza sativa3E-5240830520 (0)S
Os03g57960.1 7Oryza sativa1E-4941127490 (0)S
Zm00001eb052450_P001 agpv5Zea mays3E-5044027500 (0)S
GRMZM2G067919_P02 3.21Zea mays3E-5044027500 (0)S
v1_GRMZM2G067919_P02 4a53Zea mays3E-5044027500 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ARD(2) CENP-C_C(2) Cupin_1(2) Cupin_2(2) Cupin_3(2) Cupin_6(2)
TargetP: Secreted (Class 1 C0.005; M0.009; S0.996; _0.079)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 486 aa (-cTP 451)
Molecular Weight 55.06 kDA(-cTP )
PI 6.64(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1393Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2291Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
15908592(Carbonylated seed protein)
17293592(total seedlings û light and dark grown)
17526915(glycoproteome cell wall (stems))
18599647(seed proteome)
20118269(developing seeds)
18796151(cell wall (hypocotyl))
20702726(mature seeds)
WallDB-E.Jamet(cell wall reference proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21109274(cellwall-glycoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help