PPDB

 The Plant Proteome Database

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AT3G22500.1   Seed maturation protein
Lab Annot. late embryogenesis abundant (LEA) protein
Mapman: 33.2 development.late embryogenesis abundant
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G22490.1 11Arabidopsis thaliana1E-14126279854 (2)_
AT5G27980.1 11Arabidopsis thaliana4E-4117755660 (0)_
AT1G03120.1 11Arabidopsis thaliana2E-2812651710 (0)_
Os03g06360.1 7Oryza sativa5E-4727451580 (0)_
Os06g23350.1 7Oryza sativa3E-4327443560 (0)_
Os03g53610.1 7Oryza sativa1E-3125939470 (0)_
Zm00001eb057120_P001 agpv5Zea mays3E-6826454670 (0)_
GRMZM2G025857_P01 3.21Zea mays3E-6826454670 (0)_
v1_GRMZM2G025857_P01 4a53Zea mays3E-6826454670 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: SMP(3)
TargetP: Cytoplasm (Class 3 C0.059; M0.314; S0.030; _0.811)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 256 aa (-cTP 164)
Molecular Weight 26.78 kDA(-cTP )
PI 5.34(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2291Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
18599647(seed proteome)
18436743(specific to seeds)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help